Variant report

Variant	rs10175851
Chromosome Location	chr2:55350900-55350901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55273963..55277742-chr2:55344682..55351127,9	K562	blood:
2	chr2:55348151..55351160-chr2:55366268..55368623,3	K562	blood:
3	chr2:55350017..55352674-chr2:55360663..55363208,2	K562	blood:
4	chr2:55287127..55289595-chr2:55348601..55351225,2	K562	blood:
5	chr2:55347650..55349740-chr2:55350733..55352941,2	K562	blood:
6	chr2:55347566..55351333-chr2:55355556..55357913,4	K562	blood:
7	chr2:55274620..55276240-chr2:55348004..55351084,3	K562	blood:
8	chr2:55319141..55322072-chr2:55348443..55351423,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1009555	0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13397192	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409560	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714383	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722862	1.00[CHB][hapmap]
rs67296270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67437655	1.00[ASN][1000 genomes]
rs6744220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574696	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578257	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55337200-55351000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:55339400-55351000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:55346000-55351600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:55347400-55351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:55347400-55351000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:55347400-55351000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:55347600-55360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:55347800-55351000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:55348000-55351000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:55348000-55351000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:55348200-55351200	Weak transcription	Fetal Intestine Small	intestine
12	chr2:55348200-55360600	Weak transcription	Stomach Mucosa	stomach
13	chr2:55348400-55351000	Weak transcription	Fetal Intestine Large	intestine
14	chr2:55348400-55360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:55348600-55351000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:55348600-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:55348800-55351000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:55348800-55351000	Weak transcription	HSMMtube	muscle
19	chr2:55348800-55360400	Weak transcription	NHDF-Ad	bronchial
20	chr2:55349600-55351000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:55349600-55351600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:55349800-55360600	Weak transcription	Fetal Stomach	stomach
23	chr2:55350000-55351000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:55350000-55351000	Weak transcription	Aorta	Aorta
25	chr2:55350000-55351200	Weak transcription	Left Ventricle	heart
26	chr2:55350000-55352400	Weak transcription	Pancreas	Pancrea
27	chr2:55350000-55355200	Weak transcription	Fetal Muscle Leg	muscle
28	chr2:55350000-55360600	Weak transcription	Psoas Muscle	Psoas
29	chr2:55350000-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:55350000-55360800	Weak transcription	Lung	lung
31	chr2:55350000-55360800	Weak transcription	Ovary	ovary
32	chr2:55350200-55351000	Weak transcription	Brain Germinal Matrix	brain
33	chr2:55350200-55351000	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:55350200-55351200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:55350200-55351200	Weak transcription	Brain Angular Gyrus	brain
36	chr2:55350200-55351200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:55350200-55351200	Weak transcription	Brain Substantia Nigra	brain
38	chr2:55350200-55354400	Weak transcription	K562	blood
39	chr2:55350200-55355200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr2:55350200-55356400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr2:55350600-55351000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:55350800-55351400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:55350800-55351400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr2:55350800-55351800	Enhancers	Brain Anterior Caudate	brain

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