Variant report

Variant	rs6744220
Chromosome Location	chr2:55349760-55349761
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55347589..55350399-chr2:55353012..55356550,3	K562	blood:
2	chr2:55273963..55277742-chr2:55344682..55351127,9	K562	blood:
3	chr2:55348151..55351160-chr2:55366268..55368623,3	K562	blood:
4	chr2:55287127..55289595-chr2:55348601..55351225,2	K562	blood:
5	chr2:55347566..55351333-chr2:55355556..55357913,4	K562	blood:
6	chr2:55274620..55276240-chr2:55348004..55351084,3	K562	blood:
7	chr2:55319141..55322072-chr2:55348443..55351423,2	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1009555	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10175851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13397192	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409560	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920850	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs2920851	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2972093	0.82[AFR][1000 genomes]
rs4588228	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714383	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722862	1.00[CHB][hapmap]
rs67296270	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67437655	1.00[ASN][1000 genomes]
rs7574696	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578257	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55337200-55351000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:55339400-55351000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:55342400-55350200	Enhancers	Fetal Heart	heart
4	chr2:55344400-55350200	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:55344400-55350600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:55344600-55350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:55345400-55350200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:55345400-55350200	Enhancers	Brain Angular Gyrus	brain
9	chr2:55345600-55350200	Enhancers	Brain Germinal Matrix	brain
10	chr2:55345600-55350200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr2:55345600-55350400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr2:55346000-55351600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:55346200-55350000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr2:55346600-55350800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:55346800-55350200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:55347400-55351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:55347400-55351000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:55347400-55351000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:55347600-55350000	Enhancers	Fetal Muscle Leg	muscle
20	chr2:55347600-55360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:55347800-55350000	Enhancers	HSMM	muscle
22	chr2:55347800-55351000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:55348000-55350400	Enhancers	Brain Anterior Caudate	brain
24	chr2:55348000-55351000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:55348000-55351000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr2:55348200-55350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:55348200-55350000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:55348200-55351200	Weak transcription	Fetal Intestine Small	intestine
29	chr2:55348200-55360600	Weak transcription	Stomach Mucosa	stomach
30	chr2:55348400-55349800	Weak transcription	Esophagus	oesophagus
31	chr2:55348400-55349800	Weak transcription	Placenta	Placenta
32	chr2:55348400-55350200	Enhancers	Brain Hippocampus Middle	brain
33	chr2:55348400-55350200	Enhancers	Brain Substantia Nigra	brain
34	chr2:55348400-55350200	Enhancers	K562	blood
35	chr2:55348400-55351000	Weak transcription	Fetal Intestine Large	intestine
36	chr2:55348400-55360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:55348600-55350200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr2:55348600-55350800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:55348600-55351000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:55348600-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:55348800-55351000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr2:55348800-55351000	Weak transcription	HSMMtube	muscle
43	chr2:55348800-55360400	Weak transcription	NHDF-Ad	bronchial
44	chr2:55349200-55350000	Enhancers	Fetal Muscle Trunk	muscle
45	chr2:55349400-55350000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr2:55349400-55350000	Enhancers	Lung	lung
47	chr2:55349400-55350000	Enhancers	Psoas Muscle	Psoas
48	chr2:55349400-55350000	Enhancers	Right Atrium	heart
49	chr2:55349400-55350200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:55349600-55349800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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