Variant report

Variant	rs2920851
Chromosome Location	chr2:55346488-55346489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55273963..55277742-chr2:55344682..55351127,9	K562	blood:
2	chr2:55343511..55346556-chr2:55364762..55366710,3	K562	blood:
3	chr2:55275026..55277831-chr2:55345996..55347891,2	MCF-7	breast:
4	chr2:55344367..55347078-chr2:55367240..55368928,2	K562	blood:
5	chr2:55251702..55254676-chr2:55343936..55346646,2	K562	blood:
6	chr2:55325626..55328074-chr2:55345685..55348277,2	K562	blood:
7	chr2:55339781..55342552-chr2:55346442..55349594,4	K562	blood:
8	chr2:55344212..55347124-chr2:55355193..55359491,3	K562	blood:
9	chr2:55255186..55258524-chr2:55346221..55348339,3	K562	blood:
10	chr2:55276893..55279420-chr2:55345173..55348059,4	K562	blood:
11	chr2:55315563..55318504-chr2:55346291..55347986,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13409560	0.81[AFR][1000 genomes]
rs1444262	0.81[EUR][1000 genomes]
rs2920847	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2920850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2920864	0.85[ASN][1000 genomes]
rs2920865	0.84[ASN][1000 genomes]
rs2920866	0.85[ASN][1000 genomes]
rs2920867	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2920868	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2968780	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2968782	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2968800	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2968801	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2968802	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2972062	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2972093	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2972095	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34307608	0.82[ASN][1000 genomes]
rs4672024	0.81[JPT][hapmap]
rs6744220	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs7574696	0.85[YRI][hapmap];0.81[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2920851	ACYP2	cis	parietal	SCAN

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55337200-55351000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:55339400-55351000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:55339600-55346800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:55339600-55347000	Weak transcription	Left Ventricle	heart
5	chr2:55339800-55347000	Weak transcription	Lung	lung
6	chr2:55340600-55347000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:55340800-55347200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr2:55340800-55348000	Enhancers	Brain Hippocampus Middle	brain
9	chr2:55340800-55348000	Enhancers	Brain Substantia Nigra	brain
10	chr2:55341000-55346800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:55341000-55346800	Weak transcription	Placenta	Placenta
12	chr2:55341200-55346800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:55341200-55347000	Weak transcription	Stomach Mucosa	stomach
14	chr2:55342200-55347000	Enhancers	HSMMtube	muscle
15	chr2:55342400-55350200	Enhancers	Fetal Heart	heart
16	chr2:55343200-55346800	Weak transcription	Right Atrium	heart
17	chr2:55343200-55347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:55343400-55346800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:55343400-55347400	Weak transcription	Esophagus	oesophagus
20	chr2:55343600-55346800	Weak transcription	NHLF	lung
21	chr2:55343600-55347400	Weak transcription	NH-A	brain
22	chr2:55344200-55347200	Enhancers	Fetal Muscle Leg	muscle
23	chr2:55344400-55350200	Enhancers	Brain Cingulate Gyrus	brain
24	chr2:55344400-55350600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr2:55344600-55347200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:55344600-55347400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr2:55344600-55348600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:55344600-55350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:55345000-55346800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:55345200-55349000	Enhancers	Primary hematopoietic stem cells	blood
31	chr2:55345400-55346800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:55345400-55347200	Weak transcription	Right Ventricle	heart
33	chr2:55345400-55350200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr2:55345400-55350200	Enhancers	Brain Angular Gyrus	brain
35	chr2:55345600-55347000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:55345600-55347200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:55345600-55347400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr2:55345600-55348000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr2:55345600-55348000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr2:55345600-55348200	Enhancers	Primary B cells from cord blood	blood
41	chr2:55345600-55348200	Enhancers	Primary B cells from peripheral blood	blood
42	chr2:55345600-55348400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:55345600-55350200	Enhancers	Brain Germinal Matrix	brain
44	chr2:55345600-55350200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr2:55345600-55350400	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr2:55345800-55346600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr2:55345800-55346600	Enhancers	Muscle Satellite Cultured Cells	--
48	chr2:55345800-55346600	Flanking Active TSS	GM12878-XiMat	blood
49	chr2:55345800-55346800	Enhancers	Brain Anterior Caudate	brain
50	chr2:55345800-55346800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links