Variant report

Variant	rs2968800
Chromosome Location	chr2:55359155-55359156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55356561..55359433-chr2:55372018..55374835,2	K562	blood:
2	chr2:55272140..55279868-chr2:55356344..55371606,28	K562	blood:
3	chr2:55344212..55347124-chr2:55355193..55359491,3	K562	blood:
4	chr2:55341952..55344762-chr2:55357897..55359885,2	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11674027	0.90[AMR][1000 genomes]
rs2920847	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2920850	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2920851	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2920864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920865	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2920866	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920867	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2920868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920876	0.86[EUR][1000 genomes]
rs2968782	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2968794	0.86[ASW][hapmap]
rs2968801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2968802	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968817	0.84[EUR][1000 genomes]
rs2972062	0.91[ASN][1000 genomes]
rs2972089	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2972093	0.85[ASN][1000 genomes]
rs34307608	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671240	0.84[ASN][1000 genomes]
rs61691827	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs894961	0.81[TSI][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55347600-55360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:55348200-55360600	Weak transcription	Stomach Mucosa	stomach
3	chr2:55348400-55360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:55348600-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:55348800-55360400	Weak transcription	NHDF-Ad	bronchial
6	chr2:55349800-55360600	Weak transcription	Fetal Stomach	stomach
7	chr2:55350000-55360600	Weak transcription	Psoas Muscle	Psoas
8	chr2:55350000-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:55350000-55360800	Weak transcription	Lung	lung
10	chr2:55350000-55360800	Weak transcription	Ovary	ovary
11	chr2:55351200-55359600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:55351400-55360600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:55351400-55360600	Weak transcription	HSMMtube	muscle
14	chr2:55351600-55360400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:55354800-55360600	Weak transcription	Brain Angular Gyrus	brain
16	chr2:55355400-55360600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:55355600-55360600	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:55355800-55360600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:55355800-55360600	Weak transcription	Brain Substantia Nigra	brain
20	chr2:55356800-55360400	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:55356800-55360400	Weak transcription	K562	blood
22	chr2:55356800-55360600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:55357000-55360200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:55357000-55360600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:55357200-55360400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr2:55357200-55360800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:55357400-55360600	Weak transcription	HepG2	liver
28	chr2:55357600-55360200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:55359000-55360200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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