Variant report

Variant	rs2920868
Chromosome Location	chr2:55360651-55360652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55354045..55357806-chr2:55359264..55361491,4	K562	blood:
2	chr2:55272140..55279868-chr2:55356344..55371606,28	K562	blood:
3	chr2:55269242..55271326-chr2:55360631..55363213,2	K562	blood:
4	chr2:55275855..55279437-chr2:55359990..55364186,7	K562	blood:
5	chr2:55359631..55362469-chr2:55389581..55391287,2	MCF-7	breast:
6	chr2:55354045..55358992-chr2:55359264..55362961,10	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11674027	0.90[AMR][1000 genomes]
rs2920847	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2920850	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2920851	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2920864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920865	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2920866	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2920876	0.86[EUR][1000 genomes]
rs2968782	0.92[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2968800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2968802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968817	0.84[EUR][1000 genomes]
rs2972062	0.91[ASN][1000 genomes]
rs2972089	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2972093	0.85[ASN][1000 genomes]
rs34307608	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671240	0.84[ASN][1000 genomes]
rs61691827	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55348600-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:55350000-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:55350000-55360800	Weak transcription	Lung	lung
4	chr2:55350000-55360800	Weak transcription	Ovary	ovary
5	chr2:55357200-55360800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:55360200-55361400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:55360400-55360800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr2:55360400-55360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:55360400-55360800	Flanking Active TSS	NHDF-Ad	bronchial
10	chr2:55360400-55361400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:55360400-55361600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr2:55360400-55361600	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr2:55360400-55361600	Flanking Active TSS	K562	blood
14	chr2:55360400-55361800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr2:55360400-55361800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:55360400-55361800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:55360400-55361800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr2:55360400-55362000	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr2:55360400-55362200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:55360600-55360800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:55360600-55360800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:55360600-55360800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:55360600-55360800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr2:55360600-55360800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:55360600-55360800	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr2:55360600-55360800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr2:55360600-55360800	Enhancers	Fetal Brain Female	brain
28	chr2:55360600-55360800	Enhancers	Fetal Lung	lung
29	chr2:55360600-55360800	Enhancers	Fetal Muscle Trunk	muscle
30	chr2:55360600-55360800	Enhancers	Fetal Stomach	stomach
31	chr2:55360600-55360800	Enhancers	Fetal Thymus	thymus
32	chr2:55360600-55360800	Active TSS	Pancreas	Pancrea
33	chr2:55360600-55360800	Enhancers	Thymus	Thymus
34	chr2:55360600-55360800	Flanking Active TSS	HepG2	liver
35	chr2:55360600-55360800	Enhancers	HSMM	muscle
36	chr2:55360600-55360800	Enhancers	HSMMtube	muscle
37	chr2:55360600-55361000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr2:55360600-55361000	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr2:55360600-55361000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
40	chr2:55360600-55361000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:55360600-55361000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr2:55360600-55361000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr2:55360600-55361000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr2:55360600-55361000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr2:55360600-55361000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr2:55360600-55361000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:55360600-55361000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr2:55360600-55361000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:55360600-55361000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:55360600-55361000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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