Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55272140..55279868-chr2:55356344..55371606,28	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11674027	0.81[AMR][1000 genomes]
rs2920847	0.83[ASN][1000 genomes]
rs2920851	0.82[ASN][1000 genomes]
rs2920864	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2920865	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2920866	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2920867	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2920868	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2920876	0.89[EUR][1000 genomes]
rs2968782	0.83[ASN][1000 genomes]
rs2968800	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968801	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2968802	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968817	0.89[EUR][1000 genomes]
rs2968819	0.85[EUR][1000 genomes]
rs2972062	0.90[ASN][1000 genomes]
rs2972089	0.88[EUR][1000 genomes]
rs2972093	0.83[ASN][1000 genomes]
rs4671240	0.87[ASN][1000 genomes]
rs61691827	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34307608	RTN4	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55361800-55373000	Weak transcription	HSMMtube	muscle
2	chr2:55361800-55378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:55365200-55381000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:55365600-55378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:55366200-55378600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:55366800-55373400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:55367200-55378800	Weak transcription	Placenta	Placenta
8	chr2:55367800-55375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:55369600-55374600	Weak transcription	Hela-S3	cervix
10	chr2:55369800-55374800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:55369800-55378200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:55369800-55378600	Weak transcription	Fetal Stomach	stomach
13	chr2:55370000-55372600	Weak transcription	Stomach Mucosa	stomach
14	chr2:55370000-55375600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:55370000-55379600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:55370600-55371800	Weak transcription	K562	blood
17	chr2:55370800-55371200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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