The 2.0 version of rSNPBase

Variant report

Variant rs4671240
Chromosome Location chr2:55368882-55368883
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55361400-55370200 Enhancers Fetal Intestine Large intestine
2 chr2:55361800-55373000 Weak transcription HSMMtube muscle
3 chr2:55361800-55378600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr2:55362200-55369000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr2:55363800-55370400 Enhancers Duodenum Mucosa Duodenum
6 chr2:55364200-55369000 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr2:55364800-55369000 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr2:55365200-55369000 Flanking Active TSS K562 blood
9 chr2:55365200-55369200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr2:55365200-55381000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr2:55365600-55378600 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr2:55365800-55369000 Enhancers Brain Angular Gyrus brain
13 chr2:55365800-55369000 Enhancers Brain Cingulate Gyrus brain
14 chr2:55366200-55378600 Weak transcription Colon Smooth Muscle Colon
15 chr2:55366600-55369200 Weak transcription Fetal Lung lung
16 chr2:55366800-55369400 Enhancers Brain Anterior Caudate brain
17 chr2:55366800-55373400 Weak transcription Rectal Smooth Muscle rectum
18 chr2:55367200-55370000 Enhancers Brain Substantia Nigra brain
19 chr2:55367200-55378800 Weak transcription Placenta Placenta
20 chr2:55367600-55369400 Enhancers Rectal Mucosa Donor 29 rectum
21 chr2:55367600-55369400 Enhancers Dnd41 blood
22 chr2:55367600-55369800 Enhancers Fetal Intestine Small intestine
23 chr2:55367600-55370000 Enhancers Stomach Mucosa stomach
24 chr2:55367800-55375000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr2:55368000-55369000 Weak transcription Hela-S3 cervix
26 chr2:55368200-55369400 Enhancers Esophagus oesophagus
27 chr2:55368200-55369400 Enhancers Right Atrium heart
28 chr2:55368400-55369200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr2:55368400-55369800 Enhancers Small Intestine intestine
30 chr2:55368400-55370000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr2:55368400-55370000 Enhancers Rectal Mucosa Donor 31 rectum
32 chr2:55368600-55369400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr2:55368600-55369400 Enhancers Pancreas Pancrea
34 chr2:55368600-55369800 Enhancers Stomach Smooth Muscle stomach
35 chr2:55368600-55369800 Bivalent Enhancer HepG2 liver
36 chr2:55368600-55370000 Enhancers Primary T helper naive cells fromperipheralblood blood
37 chr2:55368600-55370000 Enhancers Fetal Adrenal Gland Adrenal Gland
38 chr2:55368600-55370000 Enhancers Sigmoid Colon Sigmoid Colon
39 chr2:55368800-55369000 Active TSS Primary T killer memory cells from peripheral blood blood
40 chr2:55368800-55369200 Enhancers HUES6 Cell Line embryonic stem cell
41 chr2:55368800-55369400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr2:55368800-55369400 Enhancers Primary T cells fromperipheralblood blood
43 chr2:55368800-55369600 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr2:55368800-55369600 Enhancers Primary T helper cells fromperipheralblood blood
45 chr2:55368800-55369800 Enhancers Fetal Stomach stomach
46 chr2:55368800-55369800 Enhancers A549 lung
47 chr2:55368800-55370200 Enhancers Primary T regulatory cells fromperipheralblood blood
48 chr2:55368800-55370200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015