Variant report

Variant	rs10177905
Chromosome Location	chr2:37153532-37153533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10084315	1.00[ASN][1000 genomes]
rs1014584	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10153588	1.00[MEX][hapmap]
rs10167453	1.00[CHD][hapmap]
rs10171853	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174832	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10177789	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10179017	1.00[ASN][1000 genomes]
rs10186611	1.00[ASN][1000 genomes]
rs10201668	1.00[CEU][hapmap]
rs10209055	1.00[ASN][1000 genomes]
rs10210881	0.88[AFR][1000 genomes]
rs11124545	1.00[ASN][1000 genomes]
rs11692052	1.00[ASN][1000 genomes]
rs12464180	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12466249	1.00[ASN][1000 genomes]
rs12475211	1.00[ASN][1000 genomes]
rs12618630	1.00[ASN][1000 genomes]
rs13382481	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13382546	1.00[ASN][1000 genomes]
rs13385947	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394344	1.00[ASN][1000 genomes]
rs13398292	1.00[ASN][1000 genomes]
rs13398577	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs13398883	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13408934	0.96[AFR][1000 genomes]
rs13411242	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419229	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13422660	1.00[CEU][hapmap]
rs13423835	1.00[ASN][1000 genomes]
rs13426552	1.00[ASN][1000 genomes]
rs13429524	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13430716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17404648	1.00[CHD][hapmap]
rs2247010	1.00[CHD][hapmap]
rs2372713	1.00[ASN][1000 genomes]
rs2464700	1.00[ASN][1000 genomes]
rs2540923	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2540994	1.00[MEX][hapmap]
rs2691111	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs28593131	0.88[AFR][1000 genomes]
rs28692629	1.00[ASN][1000 genomes]
rs28701005	0.88[AFR][1000 genomes]
rs4670171	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4670606	1.00[MEX][hapmap]
rs4670610	1.00[ASN][1000 genomes]
rs4670618	1.00[ASN][1000 genomes]
rs56808546	1.00[ASN][1000 genomes]
rs6716696	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6716891	1.00[CHD][hapmap]
rs6721362	1.00[ASN][1000 genomes]
rs6743906	1.00[MEX][hapmap]
rs7424163	1.00[MEX][hapmap]
rs7571203	0.85[AFR][1000 genomes]
rs9309000	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv456363	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv581470	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv962523	chr2:37143222-37171714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv828931	chr2:37146993-37156554	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv963787	chr2:37150704-37158383	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37094400-37154200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:37096800-37154400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:37105000-37164600	Weak transcription	Lung	lung
4	chr2:37105200-37154400	Weak transcription	Esophagus	oesophagus
5	chr2:37105200-37157800	Weak transcription	Pancreas	Pancrea
6	chr2:37105200-37164600	Weak transcription	Spleen	Spleen
7	chr2:37117600-37153600	Weak transcription	Hela-S3	cervix
8	chr2:37120000-37153800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:37120600-37168000	Weak transcription	Thymus	Thymus
10	chr2:37120800-37166400	Weak transcription	Placenta	Placenta
11	chr2:37121200-37153600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:37126200-37153600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr2:37127800-37157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:37131800-37153600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:37132200-37153600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:37132400-37192400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:37134600-37192400	Weak transcription	Fetal Stomach	stomach
18	chr2:37136400-37178800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:37138600-37160600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:37139600-37154400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr2:37140000-37153600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:37140400-37153600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr2:37140400-37153600	Weak transcription	HSMM	muscle
24	chr2:37140600-37153600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:37140600-37153600	Weak transcription	HMEC	breast
26	chr2:37140600-37153600	Weak transcription	NHDF-Ad	bronchial
27	chr2:37140600-37157800	Weak transcription	Left Ventricle	heart
28	chr2:37140800-37158000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:37140800-37158200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:37141200-37153600	Weak transcription	NHLF	lung
31	chr2:37141400-37158200	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:37142000-37153600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:37142000-37178400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:37142000-37178800	Weak transcription	Primary B cells from cord blood	blood
35	chr2:37143200-37153600	Weak transcription	Primary T cells from cord blood	blood
36	chr2:37143200-37154200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr2:37143200-37154200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:37143400-37153600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:37143400-37191000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr2:37143600-37154000	Weak transcription	Fetal Intestine Large	intestine
41	chr2:37143600-37154400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr2:37143600-37156400	Weak transcription	Dnd41	blood
43	chr2:37143800-37191800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr2:37144000-37157800	Weak transcription	K562	blood
45	chr2:37144600-37154200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr2:37146200-37153600	Weak transcription	GM12878-XiMat	blood
47	chr2:37148600-37153800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr2:37149600-37153600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr2:37150200-37153600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr2:37150200-37191800	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links