Variant report

Variant	rs10210881
Chromosome Location	chr2:37101874-37101875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37101432..37103496-chr2:37106203..37107910,2	K562	blood:
2	chr2:37095568..37097536-chr2:37100134..37102065,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10166375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174832	1.00[EUR][1000 genomes]
rs10177789	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10177905	0.88[AFR][1000 genomes]
rs10187519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187755	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13397869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398577	1.00[EUR][1000 genomes]
rs13398883	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408934	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411242	0.84[AFR][1000 genomes]
rs13419229	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13422660	1.00[ASN][1000 genomes]
rs13429524	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13430716	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372811	1.00[ASN][1000 genomes]
rs2540923	1.00[ASN][1000 genomes]
rs2691111	1.00[ASN][1000 genomes]
rs28386843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28593131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56808546	1.00[EUR][1000 genomes]
rs6716696	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72868355	0.86[EUR][1000 genomes]
rs7564242	1.00[EUR][1000 genomes]
rs7571203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37065800-37104200	Weak transcription	Right Ventricle	heart
2	chr2:37067400-37103200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:37067600-37103000	Weak transcription	Small Intestine	intestine
4	chr2:37067600-37146200	Weak transcription	Psoas Muscle	Psoas
5	chr2:37075600-37139200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:37075800-37106600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:37076800-37111600	Weak transcription	Brain Germinal Matrix	brain
8	chr2:37077000-37102400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:37077000-37102400	Weak transcription	Gastric	stomach
10	chr2:37077000-37116200	Weak transcription	Hela-S3	cervix
11	chr2:37077000-37116200	Weak transcription	NHLF	lung
12	chr2:37077200-37102400	Weak transcription	Aorta	Aorta
13	chr2:37077200-37102400	Weak transcription	Pancreas	Pancrea
14	chr2:37077200-37144400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:37077400-37136600	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:37078200-37118400	Weak transcription	Fetal Brain Male	brain
17	chr2:37079200-37111000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:37080600-37105800	Strong transcription	Primary B cells from cord blood	blood
19	chr2:37082200-37115600	Weak transcription	Stomach Mucosa	stomach
20	chr2:37083800-37108000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:37084200-37103200	Weak transcription	HSMMtube	muscle
22	chr2:37084400-37102400	Weak transcription	Spleen	Spleen
23	chr2:37085800-37102000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr2:37086400-37103600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:37087400-37146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:37090600-37105600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:37090800-37105200	Strong transcription	Adipose Nuclei	Adipose
28	chr2:37090800-37114200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr2:37091000-37105800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:37091000-37114000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:37091200-37114400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:37091400-37105800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr2:37092800-37115600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:37093200-37105800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr2:37093600-37102400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:37093600-37102400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:37094200-37103600	Weak transcription	HMEC	breast
38	chr2:37094200-37113400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr2:37094400-37103200	Weak transcription	Fetal Lung	lung
40	chr2:37094400-37110400	Weak transcription	NH-A	brain
41	chr2:37094400-37154200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr2:37094600-37102200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:37094600-37103200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr2:37094600-37104800	Weak transcription	NHEK	skin
45	chr2:37095800-37103200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:37095800-37112600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:37096000-37111200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:37096400-37106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:37096400-37110800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr2:37096400-37117000	Weak transcription	K562	blood

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