Variant report

Variant	rs2372811
Chromosome Location	chr2:37061031-37061032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10166375	1.00[ASN][1000 genomes]
rs10174832	1.00[CEU][hapmap]
rs10177905	1.00[CEU][hapmap]
rs10187519	1.00[ASN][1000 genomes]
rs10187755	1.00[ASN][1000 genomes]
rs10201668	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10209892	1.00[ASN][1000 genomes]
rs10210881	1.00[ASN][1000 genomes]
rs13385893	1.00[ASN][1000 genomes]
rs13397869	1.00[ASN][1000 genomes]
rs13398577	1.00[CEU][hapmap]
rs13408934	1.00[ASN][1000 genomes]
rs13422660	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13427183	1.00[EUR][1000 genomes]
rs13430716	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2540923	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2691111	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28386843	1.00[ASN][1000 genomes]
rs28593131	1.00[ASN][1000 genomes]
rs28701005	1.00[ASN][1000 genomes]
rs6716696	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7571203	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37051800-37061200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:37052000-37062400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:37058600-37061400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:37058800-37062200	Weak transcription	HUVEC	blood vessel
5	chr2:37060800-37062200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:37060800-37070000	Weak transcription	HSMM	muscle
7	chr2:37061000-37061400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:37061000-37063000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:37061000-37063400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links