Variant report

Variant	rs7564242
Chromosome Location	chr2:37050330-37050331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37048381..37050442-chr2:37052103..37054094,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10166375	1.00[EUR][1000 genomes]
rs10174832	1.00[EUR][1000 genomes]
rs10177789	1.00[EUR][1000 genomes]
rs10187519	1.00[EUR][1000 genomes]
rs10187755	1.00[EUR][1000 genomes]
rs10201668	1.00[EUR][1000 genomes]
rs10209892	1.00[EUR][1000 genomes]
rs10210881	1.00[EUR][1000 genomes]
rs13385893	1.00[EUR][1000 genomes]
rs13397869	1.00[EUR][1000 genomes]
rs13398577	1.00[EUR][1000 genomes]
rs13398883	1.00[EUR][1000 genomes]
rs13408934	1.00[EUR][1000 genomes]
rs13419229	1.00[EUR][1000 genomes]
rs13429524	0.83[EUR][1000 genomes]
rs13430716	1.00[EUR][1000 genomes]
rs28386843	1.00[EUR][1000 genomes]
rs28593131	1.00[EUR][1000 genomes]
rs28701005	1.00[EUR][1000 genomes]
rs56808546	1.00[EUR][1000 genomes]
rs6716696	1.00[EUR][1000 genomes]
rs72868355	0.86[EUR][1000 genomes]
rs7571203	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37044200-37051000	Enhancers	Adipose Nuclei	Adipose
2	chr2:37045200-37051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:37047200-37050600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:37048200-37050400	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr2:37048200-37050800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:37048800-37051200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:37049000-37051400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:37049200-37051200	Weak transcription	Fetal Stomach	stomach
9	chr2:37049400-37051400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:37049600-37050600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:37049800-37051400	Weak transcription	Right Atrium	heart

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