Variant report

Variant	rs13398292
Chromosome Location	chr2:37046917-37046918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37046287..37047005-chr2:37145243..37146052,3	MCF-7	breast:
2	chr2:37045354..37047713-chr2:37230824..37232867,2	MCF-7	breast:
3	chr2:37046380..37047296-chr2:37232183..37232895,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1014584	1.00[ASN][1000 genomes]
rs10171853	1.00[ASN][1000 genomes]
rs10174832	1.00[ASN][1000 genomes]
rs10177789	1.00[ASN][1000 genomes]
rs10177905	1.00[ASN][1000 genomes]
rs10179017	1.00[ASN][1000 genomes]
rs10209055	1.00[ASN][1000 genomes]
rs11124545	1.00[ASN][1000 genomes]
rs11692052	1.00[ASN][1000 genomes]
rs12464180	1.00[ASN][1000 genomes]
rs12475211	1.00[ASN][1000 genomes]
rs12618630	1.00[ASN][1000 genomes]
rs13382481	1.00[ASN][1000 genomes]
rs13382546	1.00[ASN][1000 genomes]
rs13385947	1.00[ASN][1000 genomes]
rs13394344	1.00[ASN][1000 genomes]
rs13398577	1.00[ASN][1000 genomes]
rs13398883	1.00[ASN][1000 genomes]
rs13411242	1.00[ASN][1000 genomes]
rs13417089	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13417363	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13419229	1.00[ASN][1000 genomes]
rs13423835	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426552	1.00[ASN][1000 genomes]
rs13429524	1.00[ASN][1000 genomes]
rs2372713	1.00[ASN][1000 genomes]
rs28692629	1.00[ASN][1000 genomes]
rs4670171	1.00[ASN][1000 genomes]
rs4670610	1.00[ASN][1000 genomes]
rs4670618	1.00[ASN][1000 genomes]
rs56808546	1.00[ASN][1000 genomes]
rs6721362	1.00[ASN][1000 genomes]
rs7572592	1.00[ASN][1000 genomes]
rs9309000	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37044200-37051000	Enhancers	Adipose Nuclei	Adipose
2	chr2:37045000-37047800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr2:37045200-37051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:37045600-37048000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr2:37045600-37049600	Enhancers	Stomach Mucosa	stomach
6	chr2:37045600-37050000	Enhancers	Duodenum Mucosa	Duodenum
7	chr2:37045800-37048200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr2:37046200-37049200	Enhancers	HepG2	liver
9	chr2:37046600-37049600	Enhancers	Liver	Liver
10	chr2:37046800-37047200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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