Variant report

Variant	rs10182215
Chromosome Location	chr2:173206929-173206930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13388028	0.94[AFR][1000 genomes]
rs13401476	0.94[AFR][1000 genomes]
rs13403893	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411530	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426090	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28453886	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6734996	0.94[AFR][1000 genomes]
rs6752598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7559516	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173199600-173208000	Enhancers	Stomach Mucosa	stomach
2	chr2:173202400-173207200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:173203600-173208400	Enhancers	Fetal Intestine Large	intestine
4	chr2:173204600-173207000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:173204600-173207000	Weak transcription	Spleen	Spleen
6	chr2:173204600-173218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:173205200-173207400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:173205200-173207400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:173205200-173209000	Weak transcription	Brain Anterior Caudate	brain
10	chr2:173205400-173207000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:173205400-173207000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:173205400-173208000	Enhancers	Fetal Intestine Small	intestine
13	chr2:173205600-173209000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:173205800-173207000	Enhancers	Liver	Liver
15	chr2:173205800-173207400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:173205800-173207600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:173205800-173207800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:173206000-173207600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:173206000-173207800	Enhancers	Ovary	ovary
20	chr2:173206200-173207000	Weak transcription	Osteobl	bone
21	chr2:173206400-173207000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr2:173206600-173207000	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr2:173206800-173207000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:173206800-173207000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:173206800-173207000	Enhancers	Brain Substantia Nigra	brain
26	chr2:173206800-173207000	Enhancers	Colonic Mucosa	Colon
27	chr2:173206800-173207000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr2:173206800-173207000	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr2:173206800-173207200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:173206800-173207200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:173206800-173207200	Enhancers	Fetal Muscle Trunk	muscle
32	chr2:173206800-173207200	Enhancers	Fetal Muscle Leg	muscle
33	chr2:173206800-173207200	Enhancers	Left Ventricle	heart
34	chr2:173206800-173207200	Enhancers	Lung	lung
35	chr2:173206800-173207200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr2:173206800-173207200	Enhancers	Right Atrium	heart
37	chr2:173206800-173207200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr2:173206800-173207400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr2:173206800-173207800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr2:173206800-173207800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr2:173206800-173207800	Enhancers	Gastric	stomach
42	chr2:173206800-173207800	Enhancers	Small Intestine	intestine
43	chr2:173206800-173208400	Enhancers	Pancreas	Pancrea

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