Variant report

Variant	rs13421906
Chromosome Location	chr2:173211077-173211078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10182215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13388028	0.94[AFR][1000 genomes]
rs13401476	0.94[AFR][1000 genomes]
rs13403893	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411530	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426090	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28453886	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6734996	0.94[AFR][1000 genomes]
rs6752598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7559516	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173204600-173218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:173207200-173219200	Weak transcription	Right Atrium	heart
3	chr2:173208400-173212800	Weak transcription	Pancreas	Pancrea
4	chr2:173210400-173211200	Enhancers	Fetal Intestine Large	intestine
5	chr2:173210400-173211400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:173210400-173219000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:173210600-173213800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr2:173210800-173211400	Enhancers	Fetal Intestine Small	intestine
9	chr2:173210800-173211800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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