Variant report

Variant	rs13401476
Chromosome Location	chr2:173163230-173163231
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10182215	0.94[AFR][1000 genomes]
rs13388028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421906	0.94[AFR][1000 genomes]
rs6734996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6752598	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173151400-173168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:173159200-173164400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:173159200-173164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:173159400-173164200	Weak transcription	HMEC	breast
5	chr2:173161200-173172600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:173161400-173172200	Weak transcription	Right Atrium	heart
7	chr2:173161600-173165800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:173161800-173164400	Weak transcription	NHEK	skin
9	chr2:173162200-173163600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:173162200-173164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:173162200-173164800	Enhancers	HSMMtube	muscle
12	chr2:173162400-173164200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:173162400-173172600	Weak transcription	Fetal Thymus	thymus
14	chr2:173162600-173164200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:173162600-173164200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:173162600-173164200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:173162800-173164600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:173162800-173165000	Enhancers	Fetal Muscle Leg	muscle
19	chr2:173163200-173164800	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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