Variant report

Variant	rs10184555
Chromosome Location	chr2:99012259-99012260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13395005	1.00[AMR][1000 genomes]
rs13429817	0.87[ASW][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs17031804	1.00[AMR][1000 genomes]
rs17031889	1.00[AMR][1000 genomes]
rs17031912	1.00[AMR][1000 genomes]
rs17031975	1.00[AMR][1000 genomes]
rs17032010	1.00[AMR][1000 genomes]
rs17032806	1.00[AMR][1000 genomes]
rs17032843	1.00[AMR][1000 genomes]
rs17032847	1.00[AMR][1000 genomes]
rs17032916	1.00[AMR][1000 genomes]
rs28569147	1.00[AMR][1000 genomes]
rs9631039	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99006000-99013400	Weak transcription	Spleen	Spleen
2	chr2:99012200-99013400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links