Variant report

Variant	rs17032010
Chromosome Location	chr2:99076097-99076098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:99060077..99063730-chr2:99075777..99078160,3	MCF-7	breast:
2	chr2:99064982..99066484-chr2:99074260..99077190,2	MCF-7	breast:
3	chr2:99066884..99071356-chr2:99073843..99078046,5	MCF-7	breast:
4	chr2:99075753..99078697-chr2:99082751..99085272,2	MCF-7	breast:
5	chr2:99074297..99077605-chr2:99081893..99085320,3	MCF-7	breast:
6	chr2:99071839..99073940-chr2:99075387..99077169,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000040933	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10184555	1.00[AMR][1000 genomes]
rs13007839	0.94[AFR][1000 genomes]
rs13395005	1.00[AMR][1000 genomes]
rs13429817	1.00[AMR][1000 genomes]
rs17021866	1.00[AMR][1000 genomes]
rs17031804	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17031889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17031912	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17031975	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032916	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9631039	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1007244	chr2:99063753-99136472	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99065600-99079600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:99065600-99079600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr2:99068800-99079800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:99071200-99077200	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:99071200-99079600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:99071200-99079800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:99071400-99076800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:99071600-99078000	Weak transcription	Fetal Lung	lung
9	chr2:99071600-99080200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr2:99071800-99076800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:99072000-99076400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:99072000-99079600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:99072200-99076400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:99072200-99081200	Weak transcription	Fetal Brain Male	brain
15	chr2:99072200-99083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:99072200-99086200	Weak transcription	Fetal Intestine Small	intestine
17	chr2:99072400-99078000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr2:99072400-99078000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr2:99072400-99079800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:99072400-99095000	Weak transcription	Fetal Intestine Large	intestine
21	chr2:99072600-99077000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr2:99072600-99077200	Weak transcription	Liver	Liver
23	chr2:99072600-99119600	Weak transcription	Aorta	Aorta
24	chr2:99072800-99077600	Weak transcription	Placenta	Placenta
25	chr2:99073200-99077400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:99073200-99078400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:99073400-99076600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:99073400-99079800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr2:99073600-99076800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:99073600-99077200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr2:99073600-99078000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:99073600-99082200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:99073800-99076200	Weak transcription	Small Intestine	intestine
34	chr2:99073800-99077200	Enhancers	Rectal Smooth Muscle	rectum
35	chr2:99074000-99077800	Weak transcription	Fetal Brain Female	brain
36	chr2:99074000-99078600	Enhancers	Stomach Smooth Muscle	stomach
37	chr2:99074000-99080200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:99074000-99081600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:99074000-99082200	Weak transcription	HepG2	liver
40	chr2:99074200-99076200	Weak transcription	K562	blood
41	chr2:99074200-99082200	Weak transcription	NHEK	skin
42	chr2:99074400-99076200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:99074600-99077800	Enhancers	Gastric	stomach
44	chr2:99074600-99078200	Enhancers	Stomach Mucosa	stomach
45	chr2:99074600-99078600	Enhancers	Left Ventricle	heart
46	chr2:99074800-99076200	Genic enhancers	Monocytes-CD14+_RO01746	blood
47	chr2:99074800-99076800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr2:99074800-99077600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:99074800-99078400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr2:99074800-99081200	Weak transcription	NH-A	brain

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