Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99010675..99012987-chr2:99021576..99024264,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10184555	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13395005	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13429817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030716	1.00[ASN][1000 genomes]
rs17031804	1.00[AMR][1000 genomes]
rs17031889	1.00[AMR][1000 genomes]
rs17031912	1.00[AMR][1000 genomes]
rs17031975	1.00[AMR][1000 genomes]
rs17032010	1.00[AMR][1000 genomes]
rs17032806	1.00[AMR][1000 genomes]
rs17032843	1.00[AMR][1000 genomes]
rs17032847	1.00[AMR][1000 genomes]
rs17032916	1.00[AMR][1000 genomes]
rs2271041	0.85[ASN][1000 genomes]
rs28569147	1.00[AMR][1000 genomes]
rs3769704	0.87[ASN][1000 genomes]
rs3769720	1.00[ASN][1000 genomes]
rs3769722	1.00[ASN][1000 genomes]
rs3769731	1.00[ASN][1000 genomes]
rs3769732	1.00[ASN][1000 genomes]
rs3769742	1.00[ASN][1000 genomes]
rs3820944	1.00[ASN][1000 genomes]
rs41460047	1.00[ASN][1000 genomes]
rs7602422	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99006000-99013400	Weak transcription	Spleen	Spleen
2	chr2:99007400-99011200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:99010400-99011800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:99010600-99011600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:99011000-99011400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:99011000-99011400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:99011000-99011400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:99011000-99011600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:99011000-99011600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:99011000-99011600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:99011000-99011600	Flanking Active TSS	HUVEC	blood vessel

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