Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:99012259..99015237-chr2:99017598..99020331,2	K562	blood:
2	chr2:99013022..99015237-chr2:99017598..99020500,2	K562	blood:
3	chr2:99013307..99014892-chr2:99133281..99136104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000040933	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10184555	0.87[ASW][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs13395005	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17031804	1.00[AMR][1000 genomes]
rs17031889	1.00[AMR][1000 genomes]
rs17031912	1.00[AMR][1000 genomes]
rs17031975	1.00[AMR][1000 genomes]
rs17032010	1.00[AMR][1000 genomes]
rs17032806	1.00[AMR][1000 genomes]
rs17032843	1.00[AMR][1000 genomes]
rs17032847	1.00[AMR][1000 genomes]
rs17032916	1.00[AMR][1000 genomes]
rs17502330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2271041	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28569147	1.00[AMR][1000 genomes]
rs3769704	0.87[ASN][1000 genomes]
rs3769720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3769722	1.00[ASN][1000 genomes]
rs3769731	1.00[ASN][1000 genomes]
rs3769732	1.00[ASN][1000 genomes]
rs3769742	1.00[ASN][1000 genomes]
rs3820944	1.00[ASN][1000 genomes]
rs41460047	1.00[ASN][1000 genomes]
rs7564438	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7589617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7602422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7604711	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9631039	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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