Variant report

Variant	rs10192513
Chromosome Location	chr2:114607128-114607129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr2:114606645-114607231	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr2:114606488-114607146	MCF10A-Er-Src	breast:	n/a	chr2:114606785-114606793
3	STAT3	chr2:114606498-114607147	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114606862..114609755-chr2:114646079..114648477,2	K562	blood:

Variant related genes	Relation type
ENSG00000239077	TF binding region
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10175154	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10210927	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10864924	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10864925	0.82[AMR][1000 genomes]
rs11886949	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11897814	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12472250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12472252	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12475444	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4292101	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56308039	0.84[EUR][1000 genomes]
rs72835420	0.84[EUR][1000 genomes]
rs72835422	0.86[EUR][1000 genomes]
rs7573285	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
2	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:114601400-114612000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:114603600-114607200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:114603800-114608200	Weak transcription	Fetal Lung	lung
9	chr2:114603800-114616000	Weak transcription	Spleen	Spleen
10	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:114605200-114610400	Weak transcription	Primary B cells from cord blood	blood
12	chr2:114605400-114616000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:114606200-114607200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:114606200-114607200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:114606200-114607400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:114606200-114607600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:114606200-114621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr2:114606400-114607200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:114606400-114607200	Enhancers	Stomach Mucosa	stomach
20	chr2:114606400-114607200	Enhancers	HMEC	breast
21	chr2:114606400-114607200	Enhancers	Osteobl	bone
22	chr2:114606600-114612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:114606800-114607200	Enhancers	GM12878-XiMat	blood
24	chr2:114607000-114607200	Flanking Active TSS	NHEK	skin
25	chr2:114607000-114616200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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