Variant report

Variant	rs12475444
Chromosome Location	chr2:114583914-114583915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10175154	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192513	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10195628	0.90[AFR][1000 genomes]
rs10202940	0.90[AFR][1000 genomes]
rs10210927	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864924	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864925	0.89[AMR][1000 genomes]
rs11886949	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897814	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12472250	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12472252	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4292101	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295010	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55675637	0.90[AFR][1000 genomes]
rs56308039	0.86[ASN][1000 genomes]
rs72835420	0.86[ASN][1000 genomes]
rs72835422	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7573285	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114568200-114586000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:114576400-114588400	Weak transcription	Esophagus	oesophagus
4	chr2:114577200-114584600	Weak transcription	Fetal Intestine Small	intestine
5	chr2:114580400-114588600	Weak transcription	K562	blood
6	chr2:114581800-114585400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:114582200-114586000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:114582400-114586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:114582800-114584600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:114583200-114584400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:114583200-114584600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:114583800-114584000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:114583800-114584600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:114583800-114584600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:114583800-114584600	Enhancers	Brain Hippocampus Middle	brain
16	chr2:114583800-114584800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:114583800-114584800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:114583800-114584800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:114583800-114584800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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