Variant report

Variant	rs10202940
Chromosome Location	chr2:114575858-114575859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114574865..114577393-chr2:114628655..114630821,2	MCF-7	breast:
2	chr2:114567071..114569401-chr2:114573274..114576258,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10175154	0.84[AFR][1000 genomes]
rs10195628	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10210927	0.88[AFR][1000 genomes]
rs12475444	0.90[AFR][1000 genomes]
rs4292101	0.87[AFR][1000 genomes]
rs4295010	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55675637	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7573285	0.82[AFR][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114567400-114576000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:114568200-114586000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:114571800-114576000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
5	chr2:114575400-114576000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:114575400-114576000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:114575400-114576000	Enhancers	Liver	Liver
8	chr2:114575400-114576000	Enhancers	Left Ventricle	heart
9	chr2:114575400-114576000	Enhancers	HMEC	breast
10	chr2:114575400-114576000	Enhancers	K562	blood
11	chr2:114575400-114576000	Enhancers	NHDF-Ad	bronchial
12	chr2:114575400-114576000	Enhancers	NHLF	lung
13	chr2:114575400-114576200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:114575400-114576400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:114575400-114576400	Enhancers	Lung	lung
16	chr2:114575400-114576400	Enhancers	Pancreas	Pancrea
17	chr2:114575400-114576400	Active TSS	Right Atrium	heart
18	chr2:114575400-114576800	Enhancers	HUVEC	blood vessel
19	chr2:114575400-114577200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:114575400-114577200	Enhancers	Fetal Intestine Small	intestine
21	chr2:114575400-114578000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:114575400-114578200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr2:114575400-114578200	Enhancers	Fetal Intestine Large	intestine
24	chr2:114575600-114576000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:114575600-114576000	Enhancers	Adipose Nuclei	Adipose
26	chr2:114575600-114576000	Enhancers	Duodenum Mucosa	Duodenum
27	chr2:114575600-114576000	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr2:114575600-114576000	Enhancers	Fetal Lung	lung
29	chr2:114575600-114576000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr2:114575600-114576000	Enhancers	Hela-S3	cervix
31	chr2:114575600-114576000	Enhancers	HepG2	liver
32	chr2:114575600-114576400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:114575600-114576400	Enhancers	Psoas Muscle	Psoas
34	chr2:114575600-114576400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr2:114575600-114576600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr2:114575600-114576800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr2:114575600-114577000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:114575600-114577000	Enhancers	Fetal Kidney	kidney
39	chr2:114575600-114577000	Enhancers	Rectal Smooth Muscle	rectum
40	chr2:114575600-114577000	Enhancers	HSMM	muscle
41	chr2:114575600-114577200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:114575800-114576000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:114575800-114576000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:114575800-114576000	Enhancers	Colon Smooth Muscle	Colon
45	chr2:114575800-114576000	Enhancers	Stomach Mucosa	stomach
46	chr2:114575800-114576000	Enhancers	HSMMtube	muscle
47	chr2:114575800-114576200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:114575800-114576200	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr2:114575800-114576400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr2:114575800-114576400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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