Variant report

Variant	rs4295010
Chromosome Location	chr2:114579876-114579877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10175154	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10195628	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10202940	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10210927	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10864924	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11886949	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11897814	0.81[CHB][hapmap]
rs12472250	0.88[CHB][hapmap]
rs12472252	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12475444	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12618768	0.81[CHB][hapmap]
rs1825738	0.81[CHB][hapmap]
rs4292101	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55675637	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6705687	0.81[CHB][hapmap]
rs7573285	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs904498	0.81[CHB][hapmap]
rs974057	0.81[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4295010	PSMD2	trans	cerebellum	SCAN
rs4295010	RPL23AP7	cis	multi-tissue	Pritchard
rs4295010	MGC70863	trans	multi-tissue	Pritchard

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114568200-114586000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:114576400-114580000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:114576400-114582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:114576400-114588400	Weak transcription	Esophagus	oesophagus
6	chr2:114577000-114583800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:114577200-114582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:114577200-114584600	Weak transcription	Fetal Intestine Small	intestine
9	chr2:114578000-114581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:114578200-114582200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:114579400-114580400	Enhancers	K562	blood
12	chr2:114579400-114581000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:114579800-114580400	Enhancers	NHDF-Ad	bronchial
14	chr2:114579800-114580600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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