Variant report

Variant	rs10175154
Chromosome Location	chr2:114587169-114587170
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10192513	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10195628	0.84[AFR][1000 genomes]
rs10202940	0.84[AFR][1000 genomes]
rs10210927	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864924	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864925	0.90[AMR][1000 genomes]
rs11886949	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897814	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12472250	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12472252	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12475444	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295010	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55675637	0.84[AFR][1000 genomes]
rs56308039	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72835420	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72835422	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7573285	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114576400-114588400	Weak transcription	Esophagus	oesophagus
3	chr2:114580400-114588600	Weak transcription	K562	blood
4	chr2:114584600-114595600	Weak transcription	HepG2	liver
5	chr2:114584800-114592000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:114585600-114588400	Weak transcription	NHEK	skin
7	chr2:114585600-114588600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:114585800-114588600	Weak transcription	HMEC	breast
9	chr2:114585800-114588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:114586000-114588400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:114586400-114591400	Weak transcription	Fetal Intestine Large	intestine
12	chr2:114586400-114601000	Weak transcription	Primary T cells from cord blood	blood
13	chr2:114586800-114587600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:114586800-114587800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr2:114587000-114587400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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