Variant report

Variant	rs56308039
Chromosome Location	chr2:114609019-114609020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114606862..114609755-chr2:114646079..114648477,2	K562	blood:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10175154	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10192513	0.84[EUR][1000 genomes]
rs10210927	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10864924	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11886949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11897814	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12472250	0.82[EUR][1000 genomes]
rs12472252	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12475444	0.86[ASN][1000 genomes]
rs4292101	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72835420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72835422	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7573285	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
2	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:114601400-114612000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:114603800-114616000	Weak transcription	Spleen	Spleen
8	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr2:114605200-114610400	Weak transcription	Primary B cells from cord blood	blood
10	chr2:114605400-114616000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:114606200-114621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:114606600-114612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:114607000-114616200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:114607200-114612400	Weak transcription	GM12878-XiMat	blood
15	chr2:114607200-114615200	Weak transcription	Osteobl	bone
16	chr2:114607200-114615800	Weak transcription	HMEC	breast
17	chr2:114607600-114610200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:114608000-114609200	Enhancers	Fetal Intestine Large	intestine
19	chr2:114608200-114609400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr2:114608200-114609600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:114608200-114609600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr2:114608200-114610000	Enhancers	Ovary	ovary
23	chr2:114608400-114612400	Weak transcription	Thymus	Thymus
24	chr2:114608600-114612200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:114608600-114612400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:114608600-114615200	Weak transcription	Pancreas	Pancrea
27	chr2:114608800-114609200	Weak transcription	Stomach Mucosa	stomach
28	chr2:114608800-114609400	Weak transcription	Fetal Lung	lung
29	chr2:114609000-114609600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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