Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11688462	0.89[ASN][1000 genomes]
rs12463620	0.86[ASN][1000 genomes]
rs12464763	0.85[ASN][1000 genomes]
rs12476072	0.88[ASN][1000 genomes]
rs12613882	0.87[ASN][1000 genomes]
rs12614728	0.82[EUR][1000 genomes]
rs12618802	0.86[ASN][1000 genomes]
rs12621334	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12624158	0.85[ASN][1000 genomes]
rs17012789	0.86[ASN][1000 genomes]
rs1921241	0.89[ASN][1000 genomes]
rs1921242	0.86[ASN][1000 genomes]
rs1921249	0.90[ASN][1000 genomes]
rs1997450	0.85[ASN][1000 genomes]
rs2178518	0.85[ASN][1000 genomes]
rs28884919	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34486900	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3923527	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4264582	0.99[ASN][1000 genomes]
rs4853245	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4853246	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4853247	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60185714	0.89[ASN][1000 genomes]
rs61331198	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7422743	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013614	chr2:76624220-76715121	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10196661	MINA	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76654600-76657000	Enhancers	Hela-S3	cervix
2	chr2:76656200-76656800	Enhancers	Fetal Heart	heart
3	chr2:76656600-76656800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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