Variant report

Variant	rs4264582
Chromosome Location	chr2:76657750-76657751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10196661	0.99[ASN][1000 genomes]
rs11688462	0.88[ASN][1000 genomes]
rs12463620	0.85[ASN][1000 genomes]
rs12464763	0.86[ASN][1000 genomes]
rs12476072	0.87[ASN][1000 genomes]
rs12613882	0.86[ASN][1000 genomes]
rs12618802	0.85[ASN][1000 genomes]
rs12621334	0.89[ASN][1000 genomes]
rs12624158	0.84[ASN][1000 genomes]
rs17012789	0.86[ASN][1000 genomes]
rs1921241	0.88[ASN][1000 genomes]
rs1921242	0.86[ASN][1000 genomes]
rs1921249	0.89[ASN][1000 genomes]
rs1997450	0.85[ASN][1000 genomes]
rs2178518	0.85[ASN][1000 genomes]
rs28884919	0.89[ASN][1000 genomes]
rs34486900	0.89[ASN][1000 genomes]
rs3923527	0.99[ASN][1000 genomes]
rs4853245	0.89[ASN][1000 genomes]
rs4853246	0.89[ASN][1000 genomes]
rs4853247	0.88[ASN][1000 genomes]
rs60185714	0.88[ASN][1000 genomes]
rs61331198	0.89[ASN][1000 genomes]
rs7422743	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013614	chr2:76624220-76715121	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76657200-76658400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:76657600-76658800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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