Variant report

Variant	rs1921241
Chromosome Location	chr2:76697425-76697426
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10196661	0.89[ASN][1000 genomes]
rs11688462	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463620	0.97[ASN][1000 genomes]
rs12464763	0.96[ASN][1000 genomes]
rs12475718	0.83[ASN][1000 genomes]
rs12476072	0.99[ASN][1000 genomes]
rs12477015	0.83[ASN][1000 genomes]
rs12477049	0.83[ASN][1000 genomes]
rs12477122	0.83[ASN][1000 genomes]
rs12613882	0.98[ASN][1000 genomes]
rs12618802	0.97[ASN][1000 genomes]
rs12621334	0.99[ASN][1000 genomes]
rs12624158	0.95[ASN][1000 genomes]
rs12991135	0.83[ASN][1000 genomes]
rs13020282	0.83[ASN][1000 genomes]
rs13020905	0.83[ASN][1000 genomes]
rs13035292	0.89[AFR][1000 genomes]
rs1316911	0.88[AFR][1000 genomes]
rs17012789	0.97[ASN][1000 genomes]
rs17516461	0.84[ASN][1000 genomes]
rs1921242	0.97[ASN][1000 genomes]
rs1921249	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1997450	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2178518	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2860775	0.89[AFR][1000 genomes]
rs28824528	0.84[ASN][1000 genomes]
rs28884919	0.97[ASN][1000 genomes]
rs34486900	0.97[ASN][1000 genomes]
rs35620139	0.84[ASN][1000 genomes]
rs35674985	0.83[ASN][1000 genomes]
rs3923527	0.89[ASN][1000 genomes]
rs4264582	0.88[ASN][1000 genomes]
rs4853245	0.91[ASN][1000 genomes]
rs4853246	0.98[ASN][1000 genomes]
rs4853247	0.97[ASN][1000 genomes]
rs60185714	0.97[ASN][1000 genomes]
rs61331198	0.98[ASN][1000 genomes]
rs6726434	0.88[AFR][1000 genomes]
rs72809051	0.84[ASN][1000 genomes]
rs7422743	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7559351	0.84[ASN][1000 genomes]
rs7563300	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1013614	chr2:76624220-76715121	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582227	chr2:76662404-76712789	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3356431	chr2:76697346-76714281	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76694800-76705800	Weak transcription	H1 Cell Line	embryonic stem cell

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