Variant report
| Variant | rs17516461 |
|---|---|
| Chromosome Location | chr2:76680989-76680990 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:80860013..80860777-chr2:76680632..76681152,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11688462 | 0.84[ASN][1000 genomes] |
| rs12463620 | 0.81[ASN][1000 genomes] |
| rs12464763 | 0.85[ASN][1000 genomes] |
| rs12475718 | 0.92[ASN][1000 genomes] |
| rs12476072 | 0.83[ASN][1000 genomes] |
| rs12477015 | 0.92[ASN][1000 genomes] |
| rs12477049 | 0.92[ASN][1000 genomes] |
| rs12477122 | 0.92[ASN][1000 genomes] |
| rs12613882 | 0.82[ASN][1000 genomes] |
| rs12618802 | 0.81[ASN][1000 genomes] |
| rs12621334 | 0.84[ASN][1000 genomes] |
| rs12624158 | 0.81[ASN][1000 genomes] |
| rs12991135 | 0.92[ASN][1000 genomes] |
| rs13020282 | 0.92[ASN][1000 genomes] |
| rs13020905 | 0.92[ASN][1000 genomes] |
| rs17012789 | 0.81[ASN][1000 genomes] |
| rs1921241 | 0.84[ASN][1000 genomes] |
| rs1921242 | 0.81[ASN][1000 genomes] |
| rs1921249 | 0.84[ASN][1000 genomes] |
| rs1997450 | 0.80[ASN][1000 genomes] |
| rs28824528 | 0.93[ASN][1000 genomes] |
| rs28884919 | 0.82[ASN][1000 genomes] |
| rs34486900 | 0.82[ASN][1000 genomes] |
| rs35620139 | 0.93[ASN][1000 genomes] |
| rs35674985 | 0.92[ASN][1000 genomes] |
| rs4853246 | 0.83[ASN][1000 genomes] |
| rs4853247 | 0.82[ASN][1000 genomes] |
| rs60185714 | 0.82[ASN][1000 genomes] |
| rs61331198 | 0.83[ASN][1000 genomes] |
| rs72809051 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7422743 | 0.84[ASN][1000 genomes] |
| rs7559351 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7563300 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757809 | chr2:76541920-76705354 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2759064 | chr2:76541920-76705354 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv874317 | chr2:76554077-76890567 | Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013614 | chr2:76624220-76715121 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv582227 | chr2:76662404-76712789 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76677600-76686000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
