Variant report

Variant	rs1921242
Chromosome Location	chr2:76704590-76704591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10196661	0.86[ASN][1000 genomes]
rs11688462	0.97[ASN][1000 genomes]
rs12463620	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12464763	0.93[ASN][1000 genomes]
rs12475718	0.82[ASN][1000 genomes]
rs12476072	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477015	0.82[ASN][1000 genomes]
rs12477049	0.82[ASN][1000 genomes]
rs12477122	0.82[ASN][1000 genomes]
rs12613882	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12618802	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12621334	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12624158	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12991135	0.82[ASN][1000 genomes]
rs13020282	0.82[ASN][1000 genomes]
rs13020905	0.82[ASN][1000 genomes]
rs17012789	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17516461	0.81[ASN][1000 genomes]
rs1921241	0.97[ASN][1000 genomes]
rs1921249	0.97[ASN][1000 genomes]
rs1997450	0.93[ASN][1000 genomes]
rs2178518	0.92[ASN][1000 genomes]
rs28824528	0.83[ASN][1000 genomes]
rs28884919	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34486900	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35620139	0.83[ASN][1000 genomes]
rs35674985	0.82[ASN][1000 genomes]
rs3923527	0.86[ASN][1000 genomes]
rs4264582	0.86[ASN][1000 genomes]
rs4853245	0.88[ASN][1000 genomes]
rs4853246	0.95[ASN][1000 genomes]
rs4853247	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60185714	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61331198	0.95[ASN][1000 genomes]
rs72809051	0.81[ASN][1000 genomes]
rs7422743	0.93[ASN][1000 genomes]
rs7559351	0.81[ASN][1000 genomes]
rs7563300	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1013614	chr2:76624220-76715121	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582227	chr2:76662404-76712789	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3356431	chr2:76697346-76714281	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76694800-76705800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:76701200-76705400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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