Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11688462	0.84[ASN][1000 genomes]
rs12463620	0.82[ASN][1000 genomes]
rs12475718	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12476072	0.84[ASN][1000 genomes]
rs12477015	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477049	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477122	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12613882	0.86[ASN][1000 genomes]
rs12618802	0.84[ASN][1000 genomes]
rs12621334	0.83[ASN][1000 genomes]
rs12624158	0.87[ASN][1000 genomes]
rs12991135	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13020282	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13020905	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17012789	0.85[ASN][1000 genomes]
rs17516461	0.93[ASN][1000 genomes]
rs1921241	0.84[ASN][1000 genomes]
rs1921242	0.83[ASN][1000 genomes]
rs1921249	0.83[ASN][1000 genomes]
rs1997450	0.80[ASN][1000 genomes]
rs28884919	0.80[ASN][1000 genomes]
rs34486900	0.80[ASN][1000 genomes]
rs35620139	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35674985	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4853246	0.82[ASN][1000 genomes]
rs4853247	0.81[ASN][1000 genomes]
rs60185714	0.81[ASN][1000 genomes]
rs61331198	0.82[ASN][1000 genomes]
rs72809051	0.93[ASN][1000 genomes]
rs7559351	0.93[ASN][1000 genomes]
rs7563300	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76737800-76741800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:76739600-76740000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:76739600-76740000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:76739600-76740000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:76739600-76740400	Enhancers	HUES48 Cell Line	embryonic stem cell

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