Variant report

Variant	rs10209173
Chromosome Location	chr2:141372262-141372263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10153880	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1025831	0.86[ASW][hapmap];0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1025832	0.86[ASW][hapmap];0.84[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12465956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs12465997	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs12470261	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12478109	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13393611	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13396283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1441454	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837778	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36050170	0.91[ASN][1000 genomes]
rs474275	0.91[ASN][1000 genomes]
rs475172	0.91[ASN][1000 genomes]
rs479298	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs488610	0.84[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.93[ASN][1000 genomes]
rs4954843	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4954844	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508855	0.85[JPT][hapmap]
rs511625	0.88[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs521254	0.87[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs538308	0.91[ASN][1000 genomes]
rs540441	0.93[ASN][1000 genomes]
rs540949	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs567499	0.91[ASN][1000 genomes]
rs62171950	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6747606	0.91[ASN][1000 genomes]
rs9287538	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9646668	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583193	chr2:141365171-141415043	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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