Variant report

Variant	rs540949
Chromosome Location	chr2:141351000-141351001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10153880	0.88[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10209173	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs1025831	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1025832	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs12465956	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs12465997	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs12470261	0.91[ASN][1000 genomes]
rs12477132	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12478109	0.96[ASN][1000 genomes]
rs13393611	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13396283	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs1441454	0.91[ASN][1000 genomes]
rs1837778	0.97[ASN][1000 genomes]
rs36050170	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs474275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475172	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs488610	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4954843	0.91[ASN][1000 genomes]
rs4954844	0.91[ASN][1000 genomes]
rs508855	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs511625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs521254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs538308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540441	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567499	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62171950	0.99[ASN][1000 genomes]
rs6747606	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9287538	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9646668	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875193	chr2:141334737-141361688	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141350600-141351000	Enhancers	A549	lung
2	chr2:141351000-141353800	Weak transcription	A549	lung

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