Variant report

Variant	rs508855
Chromosome Location	chr2:141349783-141349784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10153880	0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs10209173	0.85[JPT][hapmap]
rs1025831	0.87[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs1025832	0.87[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs12465956	0.81[CHB][hapmap]
rs12465997	0.81[CHB][hapmap]
rs12470261	0.91[ASN][1000 genomes]
rs12477132	0.81[CHB][hapmap]
rs12478109	0.96[ASN][1000 genomes]
rs13393611	0.87[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs13396283	0.80[CHB][hapmap]
rs1441454	0.91[ASN][1000 genomes]
rs1837778	0.97[ASN][1000 genomes]
rs36050170	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs474275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479298	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs488610	0.94[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs4954843	0.91[ASN][1000 genomes]
rs4954844	0.91[ASN][1000 genomes]
rs511625	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs521254	0.93[CHB][hapmap];0.84[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs538308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540441	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs540949	0.94[CHB][hapmap];0.85[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567499	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62171950	0.99[ASN][1000 genomes]
rs6747606	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9287538	0.81[CHB][hapmap]
rs9646668	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583192	chr2:141310721-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
2	nsv459529	chr2:141321160-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
3	nsv875193	chr2:141334737-141361688	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
4	nsv520152	chr2:141340626-141350100	Enhancers	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
5	nsv528618	chr2:141340626-141350100	Enhancers	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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