Variant report

Variant	rs1025832
Chromosome Location	chr2:141355954-141355955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10153880	0.86[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10209173	0.86[ASW][hapmap];0.84[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs1025831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12465956	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12465997	0.80[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12470261	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12477132	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs12478109	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13393611	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13396283	0.83[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1441454	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1837778	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36050170	0.96[ASN][1000 genomes]
rs474275	0.98[ASN][1000 genomes]
rs475172	0.98[ASN][1000 genomes]
rs479298	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs488610	0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4954843	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4954844	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs508855	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs511625	0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs521254	0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs538308	0.98[ASN][1000 genomes]
rs540441	0.98[ASN][1000 genomes]
rs540949	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs567499	0.98[ASN][1000 genomes]
rs62171950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6747606	0.98[ASN][1000 genomes]
rs9287538	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs9646668	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875193	chr2:141334737-141361688	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
2	nsv528276	chr2:141354396-141362222	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141351800-141359000	Weak transcription	Pancreas	Pancrea
2	chr2:141354200-141357800	Weak transcription	A549	lung

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