Variant report

Variant	rs10213141
Chromosome Location	chr4:26869403-26869404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26867383..26869599-chr4:26869869..26871933,2	K562	blood:
2	chr4:26861373..26864331-chr4:26865426..26869825,6	K562	blood:
3	chr4:26864497..26869713-chr4:26871452..26874672,4	K562	blood:

Variant related genes	Relation type
ENSG00000240005	Chromatin interaction
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10001152	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003072	1.00[AMR][1000 genomes]
rs10004586	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029816	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031739	1.00[AMR][1000 genomes]
rs10213530	1.00[AMR][1000 genomes]
rs13434414	1.00[AMR][1000 genomes]
rs28368519	1.00[AMR][1000 genomes]
rs28445792	1.00[AMR][1000 genomes]
rs28447383	1.00[AMR][1000 genomes]
rs28453819	1.00[AMR][1000 genomes]
rs28626184	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28638023	1.00[AMR][1000 genomes]
rs28647178	1.00[AMR][1000 genomes]
rs28653517	1.00[AMR][1000 genomes]
rs28667144	1.00[AMR][1000 genomes]
rs28688827	1.00[AMR][1000 genomes]
rs28690636	1.00[AMR][1000 genomes]
rs28733863	1.00[AMR][1000 genomes]
rs28819422	1.00[AMR][1000 genomes]
rs28850050	1.00[AMR][1000 genomes]
rs4422408	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56169951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821940	1.00[AMR][1000 genomes]
rs6848664	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73811393	1.00[AMR][1000 genomes]
rs73811398	1.00[AMR][1000 genomes]
rs73813221	1.00[AMR][1000 genomes]
rs73813250	1.00[AMR][1000 genomes]
rs73813253	1.00[AMR][1000 genomes]
rs9990447	1.00[AMR][1000 genomes]
rs9997247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26863800-26870600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:26863800-26874600	Weak transcription	Left Ventricle	heart
3	chr4:26863800-26874600	Weak transcription	Spleen	Spleen
4	chr4:26863800-26875400	Weak transcription	Lung	lung
5	chr4:26864200-26876800	Weak transcription	Colonic Mucosa	Colon
6	chr4:26864200-26877200	Weak transcription	Aorta	Aorta
7	chr4:26864400-26869800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:26864400-26872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:26864400-26873400	Weak transcription	A549	lung
10	chr4:26864400-26886600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:26864600-26869600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:26864600-26870800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:26864600-26870800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:26864600-26871000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr4:26864600-26871800	Enhancers	Primary B cells from peripheral blood	blood
16	chr4:26864600-26872600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:26864600-26885600	Weak transcription	Thymus	Thymus
18	chr4:26864800-26871200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:26864800-26872600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:26865000-26870600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:26865200-26873000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:26865200-26873200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:26865400-26869600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:26865600-26869800	Enhancers	Brain Angular Gyrus	brain
25	chr4:26865600-26870000	Enhancers	Dnd41	blood
26	chr4:26865600-26876000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:26865800-26870600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:26865800-26872400	Weak transcription	HSMMtube	muscle
29	chr4:26865800-26872600	Weak transcription	HSMM	muscle
30	chr4:26866000-26872600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:26866000-26880400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:26866000-26881800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:26866400-26870200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:26866600-26870800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr4:26866800-26869600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:26866800-26869600	Enhancers	K562	blood
37	chr4:26867000-26869600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr4:26867000-26869800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:26867000-26872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr4:26867200-26869600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr4:26867200-26869600	Weak transcription	Brain Substantia Nigra	brain
42	chr4:26867200-26869800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:26867200-26871600	Enhancers	Primary B cells from cord blood	blood
44	chr4:26867200-26879000	Weak transcription	Fetal Intestine Small	intestine
45	chr4:26867200-26880000	Weak transcription	Fetal Intestine Large	intestine
46	chr4:26867200-26884200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr4:26867600-26869800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:26867600-26873000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr4:26868000-26869600	Enhancers	Fetal Lung	lung
50	chr4:26868000-26872200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links