Variant report

Variant	rs10214156
Chromosome Location	chr5:42150017-42150018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10038605	0.84[AFR][1000 genomes]
rs10043233	0.87[AFR][1000 genomes]
rs10052897	0.95[YRI][hapmap]
rs10055579	0.82[AFR][1000 genomes]
rs10061546	0.82[AFR][1000 genomes]
rs10062415	0.92[AFR][1000 genomes]
rs10062488	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs10065700	0.82[AFR][1000 genomes]
rs10473266	0.87[AFR][1000 genomes]
rs12332782	0.88[AFR][1000 genomes]
rs13355247	0.84[AFR][1000 genomes]
rs13356114	0.85[AFR][1000 genomes]
rs13357631	0.84[AFR][1000 genomes]
rs28453248	0.88[AFR][1000 genomes]
rs28530765	0.83[AFR][1000 genomes]
rs6886079	1.00[AFR][1000 genomes]
rs73080081	1.00[AFR][1000 genomes]
rs73088271	0.88[AFR][1000 genomes]
rs73090140	0.84[AFR][1000 genomes]
rs73090159	0.83[AFR][1000 genomes]
rs7720817	0.88[AFR][1000 genomes]
rs7732413	0.80[AFR][1000 genomes]
rs7732650	0.82[AFR][1000 genomes]
rs7737752	0.83[AFR][1000 genomes]
rs9292847	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv462125	chr5:42019110-42192620	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv597885	chr5:42019110-42192620	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv969219	chr5:42147728-42169988	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42149200-42150400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:42149400-42150200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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