Variant report

Variant	rs73090140
Chromosome Location	chr5:42226438-42226439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10038605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062415	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10062488	0.85[AMR][1000 genomes]
rs10065700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075533	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077196	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214156	0.84[AFR][1000 genomes]
rs10473266	0.85[AMR][1000 genomes]
rs12332782	0.85[AMR][1000 genomes]
rs13355247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13356114	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13357631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28453248	0.85[AMR][1000 genomes]
rs28530765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886079	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6886712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080081	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73088271	0.85[AMR][1000 genomes]
rs73090159	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090168	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7720817	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7722048	0.85[AMR][1000 genomes]
rs7724293	0.85[AMR][1000 genomes]
rs7732413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737752	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9292847	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42219400-42228600	Weak transcription	Adipose Nuclei	Adipose
2	chr5:42223200-42228400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:42224400-42226600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:42224800-42227200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:42225200-42227400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:42225400-42228600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:42225600-42226800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:42225600-42228600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:42226400-42226800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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