Variant report

Variant	rs73090159
Chromosome Location	chr5:42238592-42238593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10038605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062415	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10062488	0.85[AMR][1000 genomes]
rs10065700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214156	0.83[AFR][1000 genomes]
rs10473266	0.85[AMR][1000 genomes]
rs12332782	0.85[AMR][1000 genomes]
rs13355247	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13356114	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13357631	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28453248	0.85[AMR][1000 genomes]
rs28530765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886079	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6886712	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080081	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73088271	0.85[AMR][1000 genomes]
rs73090140	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090168	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7720817	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7724293	0.85[AMR][1000 genomes]
rs7732413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737752	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9292847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv1825573	chr5:42229421-42306381	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880518	chr5:42231896-42375243	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42237600-42242000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:42238000-42238600	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links