Variant report

Variant	rs10215186
Chromosome Location	chr7:117737131-117737132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10235876	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11981239	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11982333	0.92[ASN][1000 genomes]
rs12669395	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17140846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17141130	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs34126707	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757800	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4454229	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59338276	0.86[ASN][1000 genomes]
rs59768076	0.86[ASN][1000 genomes]
rs6948367	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6973741	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73716919	0.92[ASN][1000 genomes]
rs73716927	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73716929	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs973023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1019337	chr7:117707746-117739400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031419	chr7:117708734-117739400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117734600-117738600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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