Variant report
Variant | rs11982333 |
---|---|
Chromosome Location | chr7:117811902-117811903 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:117810000..117816028-chr7:117818998..117827280,18 | MCF-7 | breast: | |
2 | chr7:117809348..117812176-chr7:117812689..117815376,2 | K562 | blood: | |
3 | chr7:117800817..117802687-chr7:117810955..117814071,3 | MCF-7 | breast: | |
4 | chr7:117806265..117809335-chr7:117809993..117813249,4 | K562 | blood: | |
5 | chr7:117712368..117714934-chr7:117809130..117811902,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000128534 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10215186 | 0.92[ASN][1000 genomes] |
rs10235876 | 0.93[ASN][1000 genomes] |
rs10953865 | 0.87[EUR][1000 genomes] |
rs10953866 | 0.87[EUR][1000 genomes] |
rs11981239 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12669395 | 0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12674239 | 0.84[EUR][1000 genomes] |
rs17140846 | 0.95[ASN][1000 genomes] |
rs17141130 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs17141139 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17141216 | 0.87[EUR][1000 genomes] |
rs17141219 | 0.87[EUR][1000 genomes] |
rs17141231 | 0.87[EUR][1000 genomes] |
rs17141244 | 0.87[EUR][1000 genomes] |
rs34126707 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3757800 | 0.83[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4454229 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs57970913 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs58836778 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs59338276 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs59768076 | 0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs60680906 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs61632875 | 0.87[EUR][1000 genomes] |
rs6948367 | 0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6959973 | 0.87[EUR][1000 genomes] |
rs6973741 | 0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs73483487 | 0.87[EUR][1000 genomes] |
rs73716919 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73716927 | 0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs73716929 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73716958 | 0.83[EUR][1000 genomes] |
rs973023 | 0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
2 | nsv889088 | chr7:117744660-117913648 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:117791200-117815800 | Weak transcription | Psoas Muscle | Psoas |