Variant report

Variant	rs34126707
Chromosome Location	chr7:117790687-117790688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10215186	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10235876	0.94[ASN][1000 genomes]
rs10953865	0.90[EUR][1000 genomes]
rs10953866	0.90[EUR][1000 genomes]
rs11981239	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11982333	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669395	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12674239	0.87[EUR][1000 genomes]
rs17140846	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17141130	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17141139	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17141216	0.90[EUR][1000 genomes]
rs17141219	0.90[EUR][1000 genomes]
rs17141231	0.90[EUR][1000 genomes]
rs17141244	0.90[EUR][1000 genomes]
rs3757800	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4454229	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57970913	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58836778	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59338276	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59768076	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60680906	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61632875	0.90[EUR][1000 genomes]
rs6948367	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6959973	0.90[EUR][1000 genomes]
rs6973741	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73483487	0.90[EUR][1000 genomes]
rs73716919	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73716927	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73716929	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73716958	0.86[EUR][1000 genomes]
rs973023	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv2752146	chr7:117739049-117792049	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1016264	chr7:117739146-117792988	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761358	chr7:117739158-117793000	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv608260	chr7:117739400-117792838	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1028064	chr7:117740164-117792988	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv33380	chr7:117768471-117793477	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117779600-117792200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:117788200-117790800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:117789600-117791800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:117790200-117792000	Weak transcription	Adipose Nuclei	Adipose
5	chr7:117790600-117791600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:117790600-117791800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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