Variant report

Variant	rs17141139
Chromosome Location	chr7:117885798-117885799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117874784..117876753-chr7:117884123..117886135,2	K562	blood:
2	chr7:117884617..117887581-chr7:117888612..117890526,2	MCF-7	breast:
3	chr7:117884069..117886965-chr7:117888003..117890494,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10215186	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10953865	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10953866	0.93[EUR][1000 genomes]
rs11981239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11982333	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12674239	0.90[EUR][1000 genomes]
rs17140846	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs17141130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17141216	0.93[EUR][1000 genomes]
rs17141219	0.93[EUR][1000 genomes]
rs17141231	0.93[EUR][1000 genomes]
rs17141244	0.93[EUR][1000 genomes]
rs34126707	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3757800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4454229	0.86[EUR][1000 genomes]
rs4730861	1.00[CEU][hapmap]
rs57970913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58836778	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59338276	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59768076	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60680906	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61345178	0.81[ASN][1000 genomes]
rs61632875	0.93[EUR][1000 genomes]
rs6948367	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6959973	0.93[EUR][1000 genomes]
rs6973741	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73483487	0.93[EUR][1000 genomes]
rs73716919	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73716927	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73716929	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73716958	0.83[EUR][1000 genomes]
rs7778764	0.81[EUR][1000 genomes]
rs973023	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv889089	chr7:117865940-117921267	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117884800-117886400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:117885000-117886200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:117885000-117886200	Enhancers	Dnd41	blood
4	chr7:117885200-117885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:117885200-117885800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:117885200-117885800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:117885200-117886000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:117885200-117886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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