Variant report

Variant	rs59338276
Chromosome Location	chr7:117819090-117819091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117808352..117810349-chr7:117817337..117819937,2	K562	blood:
2	chr7:117816414..117818664-chr7:117818889..117820508,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10215186	0.86[ASN][1000 genomes]
rs10235876	0.88[ASN][1000 genomes]
rs10953865	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10953866	0.87[EUR][1000 genomes]
rs11981239	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11982333	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12669395	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12674239	0.84[EUR][1000 genomes]
rs17140846	0.89[ASN][1000 genomes]
rs17141130	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17141139	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17141216	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17141219	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17141231	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17141244	0.87[EUR][1000 genomes]
rs34126707	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3757800	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454229	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57970913	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58836778	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59768076	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60680906	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61632875	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6948367	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959973	0.87[EUR][1000 genomes]
rs6973741	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73483487	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73716919	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73716927	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73716929	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73716958	0.83[EUR][1000 genomes]
rs973023	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117816000-117822600	Weak transcription	NHEK	skin
2	chr7:117816200-117822800	Weak transcription	Fetal Heart	heart
3	chr7:117816400-117822800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:117818200-117819200	Enhancers	K562	blood
5	chr7:117818400-117822400	Weak transcription	Pancreas	Pancrea
6	chr7:117818800-117822400	Weak transcription	Liver	Liver
7	chr7:117818800-117822800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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