Variant report

Variant	rs10215288
Chromosome Location	chr7:80264961-80264962
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:80264848-80265201	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr7:80264803-80265322	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr7:80264781-80265395	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr7:80264770-80265399	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80263049..80265695-chr7:80267263..80270319,3	K562	blood:

Variant related genes	Relation type
CD36	TF binding region
ENSG00000135218	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10245610	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1093827	0.82[EUR][1000 genomes]
rs1093828	0.82[EUR][1000 genomes]
rs1093832	0.82[EUR][1000 genomes]
rs1194180	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1194203	0.85[EUR][1000 genomes]
rs1205467	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12706918	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1334513	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1334514	1.00[EUR][1000 genomes]
rs1334516	1.00[EUR][1000 genomes]
rs1334517	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1334518	0.89[EUR][1000 genomes]
rs1413656	0.96[EUR][1000 genomes]
rs1413657	1.00[EUR][1000 genomes]
rs1413659	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1413662	0.82[EUR][1000 genomes]
rs1524597	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1527463	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1537592	1.00[EUR][1000 genomes]
rs1572230	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17154246	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1722501	1.00[EUR][1000 genomes]
rs1722503	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1722504	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1722508	0.96[EUR][1000 genomes]
rs1722509	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1722521	0.82[EUR][1000 genomes]
rs1761644	0.82[EUR][1000 genomes]
rs1761649	0.82[EUR][1000 genomes]
rs1761664	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1931697	1.00[EUR][1000 genomes]
rs2366856	1.00[EUR][1000 genomes]
rs2691204	0.85[EUR][1000 genomes]
rs2781844	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2781845	0.85[EUR][1000 genomes]
rs3211809	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3211855	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3211892	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3211905	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3211909	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3211912	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3211913	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4728191	1.00[CEU][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs4731646	1.00[EUR][1000 genomes]
rs73371041	0.82[EUR][1000 genomes]
rs73371043	0.82[EUR][1000 genomes]
rs73371050	0.82[EUR][1000 genomes]
rs73373037	0.82[EUR][1000 genomes]
rs73376911	0.82[EUR][1000 genomes]
rs73376957	0.96[EUR][1000 genomes]
rs73709014	0.92[EUR][1000 genomes]
rs819438	0.85[EUR][1000 genomes]
rs819439	0.85[EUR][1000 genomes]
rs819440	0.85[EUR][1000 genomes]
rs819448	0.82[EUR][1000 genomes]
rs819449	0.82[EUR][1000 genomes]
rs819450	0.82[EUR][1000 genomes]
rs819458	0.82[EUR][1000 genomes]
rs867875	0.82[EUR][1000 genomes]
rs867877	0.82[EUR][1000 genomes]
rs945097	0.85[EUR][1000 genomes]
rs945098	0.82[EUR][1000 genomes]
rs945099	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1023254	chr7:80256255-80272725	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1027411	chr7:80256255-80276756	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1032295	chr7:80256738-80276756	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2761341	chr7:80256738-80276768	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888530	chr7:80258564-80279460	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv888531	chr7:80258564-80280117	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv888532	chr7:80258564-80282636	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv971195	chr7:80260254-80270989	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80260000-80265600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:80260400-80265200	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:80260400-80267200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:80260400-80273400	Weak transcription	Small Intestine	intestine
5	chr7:80260600-80267000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:80261200-80266200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr7:80261600-80265200	Weak transcription	Psoas Muscle	Psoas
8	chr7:80261600-80266400	Enhancers	HepG2	liver
9	chr7:80261800-80265000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:80261800-80266800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:80262400-80272600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:80263200-80266200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr7:80263400-80265400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:80263400-80265600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:80263400-80265600	Enhancers	Osteobl	bone
16	chr7:80263400-80266400	Enhancers	Fetal Lung	lung
17	chr7:80263400-80267400	Enhancers	NHDF-Ad	bronchial
18	chr7:80263400-80268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:80263400-80268000	Enhancers	NHLF	lung
20	chr7:80263600-80265600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:80263600-80265800	Enhancers	Primary B cells from cord blood	blood
22	chr7:80263600-80267800	Weak transcription	Right Ventricle	heart
23	chr7:80263800-80265200	Weak transcription	HSMMtube	muscle
24	chr7:80263800-80267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:80263800-80268000	Weak transcription	Placenta	Placenta
26	chr7:80263800-80270400	Weak transcription	HMEC	breast
27	chr7:80264000-80265000	Weak transcription	Adipose Nuclei	Adipose
28	chr7:80264000-80265000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:80264000-80265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:80264200-80270000	Weak transcription	HSMM	muscle
31	chr7:80264400-80266000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:80264400-80267000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:80264400-80267200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:80264600-80265800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:80264600-80268400	Weak transcription	Liver	Liver
36	chr7:80264800-80265400	Weak transcription	Hela-S3	cervix
37	chr7:80264800-80265600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:80264800-80265600	Enhancers	Left Ventricle	heart
39	chr7:80264800-80266200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:80264800-80268200	Enhancers	Fetal Heart	heart

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