Variant report

Variant	rs819458
Chromosome Location	chr7:80196291-80196292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10215288	0.82[EUR][1000 genomes]
rs10245610	0.93[EUR][1000 genomes]
rs1093827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1093828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1093832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1194180	0.93[EUR][1000 genomes]
rs1194198	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1194203	0.96[EUR][1000 genomes]
rs1205467	0.86[EUR][1000 genomes]
rs1209572	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12706918	0.82[EUR][1000 genomes]
rs1334513	0.82[EUR][1000 genomes]
rs1334514	0.82[EUR][1000 genomes]
rs1334516	0.82[EUR][1000 genomes]
rs1334517	0.82[EUR][1000 genomes]
rs1334518	0.93[EUR][1000 genomes]
rs1413657	0.82[EUR][1000 genomes]
rs1413659	0.86[EUR][1000 genomes]
rs1413662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1524597	0.93[EUR][1000 genomes]
rs1527463	0.82[EUR][1000 genomes]
rs1537592	0.82[EUR][1000 genomes]
rs1572230	0.82[EUR][1000 genomes]
rs1722501	0.82[EUR][1000 genomes]
rs1722503	0.82[EUR][1000 genomes]
rs1722504	0.86[EUR][1000 genomes]
rs1722508	0.86[EUR][1000 genomes]
rs1722509	0.86[EUR][1000 genomes]
rs1722521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1761644	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1761649	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1761664	0.82[EUR][1000 genomes]
rs1931697	0.82[EUR][1000 genomes]
rs2366856	0.82[EUR][1000 genomes]
rs2691204	0.96[EUR][1000 genomes]
rs2781844	0.86[EUR][1000 genomes]
rs2781845	0.96[EUR][1000 genomes]
rs3211809	0.82[EUR][1000 genomes]
rs3211855	0.82[EUR][1000 genomes]
rs4728191	0.83[EUR][1000 genomes]
rs4731646	0.82[EUR][1000 genomes]
rs73371041	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371043	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373037	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376911	1.00[EUR][1000 genomes]
rs73376957	0.86[EUR][1000 genomes]
rs819438	0.96[EUR][1000 genomes]
rs819439	0.96[EUR][1000 genomes]
rs819440	0.96[EUR][1000 genomes]
rs819448	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs819449	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs819450	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs867875	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs867877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945097	0.96[EUR][1000 genomes]
rs945098	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945099	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1017381	chr7:80187725-80224314	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80193800-80196400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:80193800-80204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:80196200-80197000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links