Variant report

Variant	rs1209572
Chromosome Location	chr7:80174949-80174950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10245610	0.86[EUR][1000 genomes]
rs1093827	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1093828	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1093832	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1194180	0.86[EUR][1000 genomes]
rs1194198	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1194203	0.89[EUR][1000 genomes]
rs12706918	0.85[AMR][1000 genomes]
rs1334514	0.85[AMR][1000 genomes]
rs1334518	0.86[EUR][1000 genomes]
rs1413662	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1524597	0.86[EUR][1000 genomes]
rs1527463	0.85[AMR][1000 genomes]
rs1537592	0.85[AMR][1000 genomes]
rs1722508	0.85[AMR][1000 genomes]
rs1722521	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1761644	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1761649	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2691204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2781845	0.89[EUR][1000 genomes]
rs73371041	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73371043	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73371050	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73373037	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73376911	0.93[EUR][1000 genomes]
rs73376957	0.85[AMR][1000 genomes]
rs819438	0.89[EUR][1000 genomes]
rs819439	0.89[EUR][1000 genomes]
rs819440	0.89[EUR][1000 genomes]
rs819448	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs819449	0.93[EUR][1000 genomes]
rs819450	0.93[EUR][1000 genomes]
rs819458	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs867875	0.93[EUR][1000 genomes]
rs867877	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs945097	0.89[EUR][1000 genomes]
rs945098	0.93[EUR][1000 genomes]
rs945099	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80168000-80181800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80172800-80177800	Weak transcription	NHDF-Ad	bronchial
3	chr7:80172800-80178000	Weak transcription	Osteobl	bone
4	chr7:80173000-80176600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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