Variant report

Variant	rs1722508
Chromosome Location	chr7:80238672-80238673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10215288	0.96[EUR][1000 genomes]
rs10245610	0.92[EUR][1000 genomes]
rs1093827	0.86[EUR][1000 genomes]
rs1093828	0.86[EUR][1000 genomes]
rs1093832	0.86[EUR][1000 genomes]
rs1194180	0.92[EUR][1000 genomes]
rs1194203	0.89[EUR][1000 genomes]
rs1205467	1.00[EUR][1000 genomes]
rs1209572	0.85[AMR][1000 genomes]
rs12706918	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1334513	0.96[EUR][1000 genomes]
rs1334514	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1334516	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1334517	0.96[EUR][1000 genomes]
rs1334518	0.92[EUR][1000 genomes]
rs1413656	0.92[EUR][1000 genomes]
rs1413657	0.96[EUR][1000 genomes]
rs1413659	1.00[EUR][1000 genomes]
rs1413662	0.86[EUR][1000 genomes]
rs1524597	0.92[EUR][1000 genomes]
rs1527463	0.96[EUR][1000 genomes]
rs1537592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1572230	0.96[EUR][1000 genomes]
rs17154246	0.89[EUR][1000 genomes]
rs1722501	0.96[EUR][1000 genomes]
rs1722503	0.96[EUR][1000 genomes]
rs1722504	1.00[EUR][1000 genomes]
rs1722509	1.00[EUR][1000 genomes]
rs1722521	0.86[EUR][1000 genomes]
rs1761644	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1761649	0.86[EUR][1000 genomes]
rs1761664	0.96[EUR][1000 genomes]
rs1931697	0.96[EUR][1000 genomes]
rs2366856	0.96[EUR][1000 genomes]
rs2691204	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2781844	1.00[EUR][1000 genomes]
rs2781845	0.89[EUR][1000 genomes]
rs3211809	0.96[EUR][1000 genomes]
rs3211855	0.96[EUR][1000 genomes]
rs3211892	0.89[EUR][1000 genomes]
rs3211905	0.89[EUR][1000 genomes]
rs3211909	0.89[EUR][1000 genomes]
rs3211912	0.89[EUR][1000 genomes]
rs3211913	0.89[EUR][1000 genomes]
rs4728191	0.89[EUR][1000 genomes]
rs4731646	0.96[EUR][1000 genomes]
rs73371041	0.86[EUR][1000 genomes]
rs73371043	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73371050	0.86[EUR][1000 genomes]
rs73373037	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73376911	0.86[EUR][1000 genomes]
rs73376957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709014	0.89[EUR][1000 genomes]
rs819438	0.89[EUR][1000 genomes]
rs819439	0.89[EUR][1000 genomes]
rs819440	0.89[EUR][1000 genomes]
rs819448	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs819449	0.86[EUR][1000 genomes]
rs819450	0.86[EUR][1000 genomes]
rs819458	0.86[EUR][1000 genomes]
rs867875	0.86[EUR][1000 genomes]
rs867877	0.86[EUR][1000 genomes]
rs945097	0.89[EUR][1000 genomes]
rs945098	0.86[EUR][1000 genomes]
rs945099	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80231800-80240200	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:80234600-80240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:80234800-80241600	Enhancers	Fetal Intestine Small	intestine
4	chr7:80235600-80239600	Enhancers	Fetal Intestine Large	intestine
5	chr7:80235800-80239400	Enhancers	Fetal Lung	lung
6	chr7:80236000-80239800	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:80236000-80240400	Weak transcription	Fetal Stomach	stomach
8	chr7:80236200-80240400	Weak transcription	Psoas Muscle	Psoas
9	chr7:80236400-80238800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr7:80236800-80241200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:80237000-80239000	Active TSS	Adipose Nuclei	Adipose
12	chr7:80237000-80241000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:80237000-80241000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:80237200-80240200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:80237400-80240000	Weak transcription	Right Ventricle	heart
16	chr7:80237600-80242800	Enhancers	Liver	Liver
17	chr7:80237600-80243000	Enhancers	Fetal Heart	heart
18	chr7:80238000-80238800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:80238000-80239400	Enhancers	Stomach Mucosa	stomach
20	chr7:80238000-80240400	Enhancers	HepG2	liver
21	chr7:80238200-80238800	Enhancers	Small Intestine	intestine
22	chr7:80238600-80238800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr7:80238600-80239400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:80238600-80239400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:80238600-80239400	Enhancers	Gastric	stomach
26	chr7:80238600-80239400	Enhancers	Ovary	ovary
27	chr7:80238600-80239400	Enhancers	Pancreas	Pancrea
28	chr7:80238600-80239400	Enhancers	Right Atrium	heart
29	chr7:80238600-80239600	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr7:80238600-80240800	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links