Variant report

Variant	rs945099
Chromosome Location	chr7:80213371-80213372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10215288	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10245610	0.93[EUR][1000 genomes]
rs1093827	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1093828	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1093832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1194180	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1194198	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1194203	0.96[EUR][1000 genomes]
rs1205467	0.86[EUR][1000 genomes]
rs1209572	0.93[EUR][1000 genomes]
rs12706918	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1334513	0.82[EUR][1000 genomes]
rs1334514	0.82[EUR][1000 genomes]
rs1334516	0.82[EUR][1000 genomes]
rs1334517	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1334518	0.93[EUR][1000 genomes]
rs1413657	0.82[EUR][1000 genomes]
rs1413659	0.86[EUR][1000 genomes]
rs1413662	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1524597	0.93[EUR][1000 genomes]
rs1527463	0.82[EUR][1000 genomes]
rs1537592	0.82[EUR][1000 genomes]
rs1572230	0.82[EUR][1000 genomes]
rs1722501	0.82[EUR][1000 genomes]
rs1722503	0.82[EUR][1000 genomes]
rs1722504	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1722508	0.86[EUR][1000 genomes]
rs1722509	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1722521	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1761644	1.00[EUR][1000 genomes]
rs1761649	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1761664	0.82[EUR][1000 genomes]
rs1931697	0.82[EUR][1000 genomes]
rs2366856	0.82[EUR][1000 genomes]
rs2691204	0.96[EUR][1000 genomes]
rs2781844	0.86[EUR][1000 genomes]
rs2781845	0.96[EUR][1000 genomes]
rs3211809	0.82[EUR][1000 genomes]
rs3211855	0.82[EUR][1000 genomes]
rs3211892	1.00[CEU][hapmap]
rs4728191	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4731646	0.82[EUR][1000 genomes]
rs73371041	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371043	1.00[EUR][1000 genomes]
rs73371050	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373037	1.00[EUR][1000 genomes]
rs73376911	1.00[EUR][1000 genomes]
rs73376957	0.86[EUR][1000 genomes]
rs819438	0.96[EUR][1000 genomes]
rs819439	0.96[EUR][1000 genomes]
rs819440	0.96[EUR][1000 genomes]
rs819448	1.00[EUR][1000 genomes]
rs819449	1.00[EUR][1000 genomes]
rs819450	1.00[EUR][1000 genomes]
rs819458	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs867875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs867877	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945097	0.96[EUR][1000 genomes]
rs945098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1017381	chr7:80187725-80224314	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80209400-80216800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:80211000-80223200	Weak transcription	Left Ventricle	heart
3	chr7:80212400-80214800	Enhancers	Fetal Heart	heart
4	chr7:80212600-80213600	Enhancers	Colon Smooth Muscle	Colon
5	chr7:80212600-80213800	Enhancers	Fetal Intestine Large	intestine
6	chr7:80212600-80226000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:80212800-80213800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:80212800-80213800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:80212800-80214200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:80212800-80214400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:80212800-80214400	Enhancers	Osteobl	bone
12	chr7:80212800-80214800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:80213000-80214400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:80213000-80215200	Enhancers	Fetal Intestine Small	intestine
15	chr7:80213200-80213600	Enhancers	Psoas Muscle	Psoas
16	chr7:80213200-80214200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:80213200-80214200	Weak transcription	Stomach Mucosa	stomach
18	chr7:80213200-80214400	Enhancers	NHEK	skin
19	chr7:80213200-80214600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:80213200-80214600	Enhancers	HMEC	breast
21	chr7:80213200-80215200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links