Variant report

Variant	rs10220171
Chromosome Location	chr13:59931773-59931774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10219927	0.83[ASN][1000 genomes]
rs10219957	0.81[ASN][1000 genomes]
rs10220135	0.81[ASN][1000 genomes]
rs10454642	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11148465	0.83[EUR][1000 genomes]
rs12428489	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12584255	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326088	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1326089	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1326090	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1326091	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1853920	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1932745	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34037070	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35012407	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4262849	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4559813	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4884334	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4886159	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5000933	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7318040	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538394	0.82[ASN][1000 genomes]
rs9597996	0.80[ASN][1000 genomes]
rs9597997	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9597998	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9597999	0.83[EUR][1000 genomes]
rs9805343	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832621	chr13:59784624-59938693	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:59924800-59938600	Weak transcription	Right Ventricle	heart
2	chr13:59927600-59938200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:59927600-59938600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:59929000-59932600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:59929600-59932000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:59930200-59932000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:59930600-59932600	Enhancers	Pancreas	Pancrea
8	chr13:59930800-59934600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr13:59931000-59932200	Weak transcription	Left Ventricle	heart
10	chr13:59931000-59932200	Weak transcription	Right Atrium	heart
11	chr13:59931200-59932000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:59931200-59932000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:59931200-59932200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:59931200-59932200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:59931200-59932200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:59931200-59932200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr13:59931200-59932200	Weak transcription	Placenta	Placenta
18	chr13:59931200-59932200	Weak transcription	Lung	lung
19	chr13:59931200-59932200	Weak transcription	Psoas Muscle	Psoas
20	chr13:59931200-59932200	Weak transcription	Spleen	Spleen
21	chr13:59931200-59933200	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:59931200-59933400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr13:59931200-59933800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr13:59931200-59937600	Weak transcription	Fetal Heart	heart
25	chr13:59931200-59942800	Weak transcription	Gastric	stomach
26	chr13:59931400-59931800	Weak transcription	Adipose Nuclei	Adipose
27	chr13:59931400-59934000	Weak transcription	HUVEC	blood vessel
28	chr13:59931600-59932000	Weak transcription	Colon Smooth Muscle	Colon

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